WORKSHOP OBJECTIVES:Â The Playbook Workflow Builder (PWB) is a web-based platform that facilitates the interactive construction of bioinformatics workflows by enabling users to utilize an ever-growing network of input datasets, semantically annotated API endpoints, and data visualization tools. Via a user-friendly web-based user interface, workflows can be constructed from contributed building blocks without technical expertise. Workflows can be alternatively created using a chatbot. The output of the workflows includes an interactive online report, publication-like PDF file, and a YouTube video. The workshop will demonstrate how to use the platform via interactive sessions, as well as introduce ways for the community to contribute workflow building blocks to the platform.Â
OUTCOMES:Â Participants will gain hands-on experience analyzing genes, gene sets, and other datasets; forming hypotheses from omics data; and building workflows designed for reuse, provenance tracking, and FAIR compliance. Working in groups, participants will be able to create use cases for drug and target discovery and ask questions that would be answered by community experts. Participants will leave with the ability to conduct analysis and visualization without coding, extend PWB capabilities, and contribute workflows that are discoverable, shareable, and reproducible.Â
AUDIENCE AND PRE-REQUISITES: This workshop serves anyone seeking help analyzing omics datasets or contributing to a community ecosystem of FAIR-aligned tools and workflows. No pre-requisites necessary to register for this workshop.Â
AGENDA:
9:10–10:00 Presentations: Tour of the Platform and Use Cases
10:00–11:00 Hands on Session*: Building and Publishing Workflows with PWB
User guide: https://github.com/MaayanLab/Playbook-Workflow-Builder/blob/main/docs/user/index.mdÂ
11:00–12:00 Hands on Session*: Creating Building Blocks to Add to the PWB Platform
Developer guide: https://github.com/MaayanLab/Playbook-Workflow-Builder/blob/main/docs/index.mdÂ
*Please bring your laptop to participate in the interactive sessions.
The Playbook Workflow Builder project is partially funded by the NIH grant OT2OD036435 for the CFDE Data Coordination Center (DRC) of the CFDE. Please visit the CFDE Workbench website for more details about the CFDE and the DRC: https://info.cfde.cloud/.
PWB Website:Â https://playbook-workflow-builder.cloud/Â
PWB Publication:Â https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012901